If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ), 'gf_id' => 'HOM05D000935', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000935' ), 'data_identifier' => 'HOM05D000935', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000935', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p20730' => 'bna', 'A06p42870' => 'bna', 'A07p03710' => 'bna', 'A07p42150' => 'bna', 'A08p05200' => 'bna', 'A09p15030' => 'bna', 'Aa31LG4G6580' => 'aar', 'Aa31LG8G14700' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3622' => 'aag', 'Actinidia00871' => 'ach', 'Actinidia15527' => 'ach', 'Actinidia17081' => 'ach', 'Actinidia17145' => 'ach', 'Actinidia17985' => 'ach', 'Actinidia28617' => 'ach', 'Actinidia28756' => 'ach', 'Actinidia28757' => 'ach', 'Ah.01g010440' => 'amhyb', 'Ah.01g017720' => 'amhyb', 'Ah.03g143040' => 'amhyb', 'AL2G36630' => 'aly', 'AL3G50250' => 'aly', 'Aqoxy5G00960' => 'aox', 'Aqoxy6G03021' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6CC1CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8T1UF6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHBJ1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JEQD5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q6L6L9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QXP7G7' => 'arhy', 'AT1G76490' => 'ath', 'AT2G17370' => 'ath', 'ATR0605G381' => 'atr', 'Atru.chr13.45' => 'acertr', 'Atru.chr2.169' => 'acertr', 'Atru.chr3.59' => 'acertr', 'Atru.chr5.3582' => 'acertr', 'AUR62003717' => 'cqu', 'AUR62010210' => 'cqu', 'AUR62013199' => 'cqu', 'AUR62044351' => 'cqu', 'BcaB03g16493' => 'bca', 'BcaB05g24994' => 'bca', 'BcaC01g00953' => 'bca', 'BcaC01g06322' => 'bca', 'BcaC03g15677' => 'bca', 'BcaC03g15946' => 'bca', 'BcaC03g15947' => 'bca', 'BcaC03g16139' => 'bca', 'BcaC04g20336' => 'bca', 'BcaC06g34959' => 'bca', 'BcaC06g36259' => 'bca', 'BcaC06g36260' => 'bca', 'BcaC06g36261' => 'bca', 'BcaC06g36263' => 'bca', 'BcaC06g36264' => 'bca', 'BcaC08g47155' => 'bca', 'BcaC08g47240' => 'bca', 'BNapus_Darmor_BZH_scaffold_119p00110' => 'bna', 'BNapus_Darmor_BZH_scaffold_133p00130' => 'bna', 'BNapus_Darmor_BZH_scaffold_97p00320' => 'bna', 'BolC1t00230H' => 'bol', 'BolC1t00231H' => 'bol', 'BolC1t00883H' => 'bol', 'BolC2t07627H' => 'bol', 'BolC2t08024H' => 'bol', 'BolC2t08026H' => 'bol', 'BolC2t08438H' => 'bol', 'BolC2t08859H' => 'bol', 'BolC2t09397H' => 'bol', 'BolC2t09723H' => 'bol', 'BolC2t09946H' => 'bol', 'BolC2t10125H' => 'bol', 'BolC2t10491H' => 'bol', 'BolC2t11796H' => 'bol', 'BolC3t14107H' => 'bol', 'BolC3t14516H' => 'bol', 'BolC3t16789H' => 'bol', 'BolC3t17661H' => 'bol', 'BolC3t19030H' => 'bol', 'BolC3t19050H' => 'bol', 'BolC3t19654H' => 'bol', 'BolC3t19828H' => 'bol', 'BolC3t20203H' => 'bol', 'BolC3t20448H' => 'bol', 'BolC3t20449H' => 'bol', 'BolC3t20921H' => 'bol', 'BolC4t23630H' => 'bol', 'BolC4t24945H' => 'bol', 'BolC4t25599H' => 'bol', 'BolC4t26490H' => 'bol', 'BolC4t27538H' => 'bol', 'BolC5t29374H' => 'bol', 'BolC5t30568H' => 'bol', 'BolC5t31011H' => 'bol', 'BolC5t32210H' => 'bol', 'BolC5t34318H' => 'bol', 'BolC6t35547H' => 'bol', 'BolC6t35574H' => 'bol', 'BolC6t35936H' => 'bol', 'BolC6t37413H' => 'bol', 'BolC6t38096H' => 'bol', 'BolC6t38369H' => 'bol', 'BolC6t38710H' => 'bol', 'BolC6t38936H' => 'bol', 'BolC6t40098H' => 'bol', 'BolC7t40999H' => 'bol', 'BolC7t42393H' => 'bol', 'BolC7t42394H' => 'bol', 'BolC7t42395H' => 'bol', 'BolC7t42410H' => 'bol', 'BolC7t42585H' => 'bol', 'BolC7t43118H' => 'bol', 'BolC7t43535H' => 'bol', 'BolC7t45817H' => 'bol', 'BolC8t46829H' => 'bol', 'BolC8t47363H' => 'bol', 'BolC8t47373H' => 'bol', 'BolC9t54108H' => 'bol', 'BolC9t55393H' => 'bol', 'BolC9t57352H' => 'bol', 'BolC9t58593H' => 'bol', 'BolC9t58602H' => 'bol', 'BolC9t58711H' => 'bol', 'BolC9t59210H' => 'bol', 'BraA02t07105Z' => 'bra', 'BraA03t09416Z' => 'bra', 'BraA07t28156Z' => 'bra', 'BraA07t31744Z' => 'bra', 'BraA08t32538Z' => 'bra', 'BraA09t37148Z' => 'bra', 'BraA09t38816Z' => 'bra', 'BraA09t40014Z' => 'bra', 'C01p02400' => 'bna', 'C01p08920' => 'bna', 'C01p20790' => 'bna', 'C01p27460' => 'bna', 'C02p15100' => 'bna', 'C02p18790' => 'bna', 'C02p18800' => 'bna', 'C02p18810' => 'bna', 'C02p18820' => 'bna', 'C02p18840' => 'bna', 'C02p22920' => 'bna', 'C02p22930' => 'bna', 'C02p28160' => 'bna', 'C02p32970' => 'bna', 'C02p37080' => 'bna', 'C02p39360' => 'bna', 'C02p41130' => 'bna', 'C02p43840' => 'bna', 'C02p44460' => 'bna', 'C02p49460' => 'bna', 'C02p52490' => 'bna', 'C02p57270' => 'bna', 'C03p16930' => 'bna', 'C03p24890' => 'bna', 'C03p29260' => 'bna', 'C03p35450' => 'bna', 'C03p38350' => 'bna', 'C03p38410' => 'bna', 'C03p43710' => 'bna', 'C03p45260' => 'bna', 'C03p68070' => 'bna', 'C03p68240' => 'bna', 'C03p73610' => 'bna', 'C03p73630' => 'bna', 'C03p73850' => 'bna', 'C03p74050' => 'bna', 'C03p81770' => 'bna', 'C03p86300' => 'bna', 'C04p21050' => 'bna', 'C04p31050' => 'bna', 'C04p31060' => 'bna', 'C04p33780' => 'bna', 'C04p40220' => 'bna', 'C04p40230' => 'bna', 'C04p49060' => 'bna', 'C04p49070' => 'bna', 'C04p60380' => 'bna', 'C04p60390' => 'bna', 'C05p06140' => 'bna', 'C05p06150' => 'bna', 'C05p15390' => 'bna', 'C05p25930' => 'bna', 'C05p30910' => 'bna', 'C05p30920' => 'bna', 'C05p30950' => 'bna', 'C05p34850' => 'bna', 'C05p49680' => 'bna', 'C05p56530' => 'bna', 'C06p04430' => 'bna', 'C06p04440' => 'bna', 'C06p08580' => 'bna', 'C06p27310' => 'bna', 'C06p29320' => 'bna', 'C06p32460' => 'bna', 'C06p35860' => 'bna', 'C06p38370' => 'bna', 'C06p43700' => 'bna', 'C06p44520' => 'bna', 'C06p50720' => 'bna', 'C07p05920' => 'bna', 'C07p18840' => 'bna', 'C07p18850' => 'bna', 'C07p19000' => 'bna', 'C07p20550' => 'bna', 'C07p53220' => 'bna', 'C08p00280' => 'bna', 'C08p05450' => 'bna', 'C08p05540' => 'bna', 'C08p26920' => 'bna', 'C09p12190' => 'bna', 'C09p19580' => 'bna', 'C09p43690' => 'bna', 'C09p44780' => 'bna', 'C09p57250' => 'bna', 'C09p58690' => 'bna', 'C09p63690' => 'bna', 'CAN.G1330.14' => 'can', 'CAN.G1428.11' => 'can', 'CAN.G158.38' => 'can', 'CAN.G178.1' => 'can', 'CAN.G291.11' => 'can', 'CAN.G3041.1' => 'can', 'CAN.G508.31' => 'can', 'CAN.G675.37' => 'can', 'CAN.G794.4' => 'can', 'CAN.G801.39' => 'can', 'CAN.G954.4' => 'can', 'CAN.G954.5' => 'can', 'CANSAT25G1179' => 'cansat', 'CANSAT25G2483' => 'cansat', 'CARHR070040' => 'chi', 'CARHR107530' => 'chi', 'Carub.0002s2340' => 'cru', 'Carub.0003s3140' => 'cru', 'Carub.0003s3141' => 'cru', 'Ca_06143_v3' => 'car', 'Ca_22439_v3' => 'car', 'Ca_25018_v3' => 'car', 'Ca_30547_v3' => 'car', 'CBR_g40139' => 'cbr', 'Cc00_g22150' => 'ccan', 'Cc07_g12220' => 'ccan', 'Cc10_g00230' => 'ccan', 'CDE06G2815' => 'cde', 'CDE07G1930' => 'cde', 'Cfa005398' => 'cfa', 'Cfa007112' => 'cfa', 'Cfa014141' => 'cfa', 'Cfa023546' => 'cfa', 'Ciclev10000761m.g' => 'ccl', 'Ciclev10028082m.g' => 'ccl', 'CiPaw.05G095300' => 'cil', 'CiPaw.06G113700' => 'cil', 'CiPaw.06G113800' => 'cil', 'CiPaw.07G132900' => 'cil', 'ClCG02G003220' => 'cla', 'ClCG02G010770' => 'cla', 'ClCG08G009150' => 'cla', 'COL.COLO4_03723' => 'col', 'COL.COLO4_12286' => 'col', 'Cpa.g.sc232.9' => 'cpa', 'Cpa.g.sc26.7' => 'cpa', 'Cpa.g.sc6.348' => 'cpa', 'CsaV3_6G009990' => 'csa', 'CsaV3_6G035980' => 'csa', 'CsaV3_7G002170' => 'csa', 'CSS0013904' => 'camsi', 'CSS0027456' => 'camsi', 'CSS0029663' => 'camsi', 'CSS0044307' => 'camsi', 'CSS0045944' => 'camsi', 'DCAR_009859' => 'dca', 'DCAR_016801' => 'dca', 'DCAR_016803' => 'dca', 'Dinv03219' => 'din', 'Dinv05493' => 'din', 'Dinv18634' => 'din', 'Dinv24756' => 'din', 'Dinv25041' => 'din', 'Dinv26249' => 'din', 'Dinv28296' => 'din', 'Dinv40220' => 'din', 'Dinv40224' => 'din', 'Duzib052G1124' => 'dzi', 'Duzib132G0659' => 'dzi', 'Duzib248G0977' => 'dzi', 'ECA232G4060' => 'eca', 'ECA233G1039' => 'eca', 'ECA234G2490' => 'eca', 'ECA246G4607' => 'eca', 'ECA247G1776' => 'eca', 'EL10Ac9g21559' => 'bvu', 'Eucgr.F01818' => 'egr', 'Eucgr.F03606' => 'egr', 'Eucgr.H05007' => 'egr', 'Eucgr.H05008' => 'egr', 'Eucgr.H05009' => 'egr', 'Eucgr.I01544' => 'egr', 'Eucgr.I02200' => 'egr', 'Eucgr.J02561' => 'egr', 'FAN04G0057' => 'fan', 'FAN08G2358' => 'fan', 'FAN13G0990' => 'fan', 'FAN13G1084' => 'fan', 'FAN15G0180' => 'fan', 'FAN15G1161' => 'fan', 'FAN15G2089' => 'fan', 'FAN15G3458' => 'fan', 'FAN15G3729' => 'fan', 'FAN18G3537' => 'fan', 'FAN19G1612' => 'fan', 'FAN23G2541' => 'fan', 'FAN23G3059' => 'fan', 'FAN24G0339' => 'fan', 'FAN24G1114' => 'fan', 'FAN24G1608' => 'fan', 'FAN24G2213' => 'fan', 'FAN24G2864' => 'fan', 'FAN24G3083' => 'fan', 'FAN26G3116' => 'fan', 'FAN27G1332' => 'fan', 'FAN27G2510' => 'fan', 'FAN27G2607' => 'fan', 'FAN27G3228' => 'fan', 'FAN28G0032' => 'fan', 'FAN28G0723' => 'fan', 'FvH4_1g09980' => 'fve', 'FvH4_2g17051' => 'fve', 'FvH4_2g17060' => 'fve', 'FvH4_2g17080' => 'fve', 'FvH4_2g17090' => 'fve', 'FvH4_2g17091' => 'fve', 'FvH4_2g17100' => 'fve', 'FvH4_5g26180' => 'fve', 'Glyma.01G156700' => 'gma', 'Glyma.02G273100' => 'gma', 'Glyma.09G196000' => 'gma', 'Glyma.11G088000' => 'gma', 'Glyma.14G045900' => 'gma', 'Glyma.16G113000' => 'gma', 'Glyma.20G058000' => 'gma', 'Gohir.A01G011700' => 'ghi', 'Gohir.A03G169600' => 'ghi', 'Gohir.A03G169700' => 'ghi', 'Gohir.A03G169800' => 'ghi', 'Gohir.A03G169900' => 'ghi', 'Gohir.A04G110960' => 'ghi', 'Gohir.A04G111100' => 'ghi', 'Gohir.A12G012400' => 'ghi', 'Gohir.A13G064100' => 'ghi', 'Gohir.D01G012900' => 'ghi', 'Gohir.D01G119500' => 'ghi', 'Gohir.D02G192700' => 'ghi', 'Gohir.D02G192800' => 'ghi', 'Gohir.D02G192900' => 'ghi', 'Gohir.D02G193000' => 'ghi', 'Gohir.D04G151400' => 'ghi', 'Gohir.D12G012800' => 'ghi', 'Gohir.D13G057851' => 'ghi', 'Gorai.002G014700' => 'gra', 'Gorai.002G146000' => 'gra', 'Gorai.005G215500' => 'gra', 'Gorai.005G215600' => 'gra', 'Gorai.005G215700' => 'gra', 'Gorai.005G215800' => 'gra', 'Gorai.008G013000' => 'gra', 'Gorai.012G138100' => 'gra', 'Gorai.013G065200' => 'gra', 'GSVIVG01013435001' => 'vvi', 'GSVIVG01023852001' => 'vvi', 'GSVIVG01026444001' => 'vvi', 'HanXRQChr08g0216801' => 'han', 'HanXRQChr09g0241951' => 'han', 'HanXRQChr12g0365771' => 'han', 'HanXRQChr15g0484121' => 'han', 'HanXRQChr16g0532181' => 'han', 'HanXRQChr17g0558571' => 'han', 'HanXRQChr17g0558581' => 'han', 'Haze_01954' => 'cav', 'Haze_03642' => 'cav', 'Haze_22866' => 'cav', 'Haze_26519' => 'cav', 'Haze_26651' => 'cav', 'Hma1.2p1_0085F.1_g044340' => 'hma', 'Hma1.2p1_0810F.1_g222020' => 'hma', 'HPP92_003845' => 'vpl', 'HPP92_017804' => 'vpl', 'HPP92_018843' => 'vpl', 'HPP92_018901' => 'vpl', 'HPP92_018965' => 'vpl', 'Hund00102' => 'sun', 'Hund03580' => 'sun', 'Hund05073' => 'sun', 'Hund06350' => 'sun', 'Lalb_Chr04g0249761' => 'lal', 'Lalb_Chr05g0214981' => 'lal', 'Lalb_Chr09g0333121' => 'lal', 'Lalb_Chr09g0334481' => 'lal', 'Lalb_Chr10g0105831' => 'lal', 'Lalb_Chr16g0380191' => 'lal', 'Lalb_Chr16g0391721' => 'lal', 'Lj2C506T1' => 'lonja', 'Lj2g0017776' => 'lja', 'Lj4A243T61' => 'lonja', 'Lj4C812T5' => 'lonja', 'Lj5A170T102' => 'lonja', 'Lj9A409T90' => 'lonja', 'LjContig00247g0004189' => 'lja', 'LjContig00564g0010978' => 'lja', 'Lsat_1_v5_gn_2_74261' => 'lsa', 'Lsat_1_v5_gn_3_69080' => 'lsa', 'Lsat_1_v5_gn_4_68260' => 'lsa', 'Lsat_1_v5_gn_8_129040' => 'lsa', 'Lsat_1_v5_gn_8_129061' => 'lsa', 'Lsat_1_v5_gn_8_129360' => 'lsa', 'Lsat_1_v5_gn_8_26061' => 'lsa', 'Lsat_1_v5_gn_9_48281' => 'lsa', 'Manes.01G157500' => 'mes', 'Manes.02G116900' => 'mes', 'Manes.03G096600' => 'mes', 'Manes.05G128600' => 'mes', 'Manes.15G114100' => 'mes', 'Mapoly0015s0085' => 'mpo', 'MBI01_g28407_MAGBIO' => 'mbi', 'MBI04_g31213_MAGBIO' => 'mbi', 'MD00G1059700' => 'mdo', 'MD02G1108500' => 'mdo', 'MD02G1108700' => 'mdo', 'MD04G1238500' => 'mdo', 'MD05G1143500' => 'mdo', 'MD08G1025200' => 'mdo', 'MD10G1143400' => 'mdo', 'MD10G1268900' => 'mdo', 'MD13G1262400' => 'mdo', 'MD15G1227900' => 'mdo', 'MD16G1201100' => 'mdo', 'Medtr5g024880' => 'mtr', 'Medtr5g026430' => 'mtr', 'Medtr5g026450' => 'mtr', 'Medtr5g026460' => 'mtr', 'Medtr5g026480' => 'mtr', 'Medtr5g026500' => 'mtr', 'Medtr5g087550' => 'mtr', 'Medtr5g091050' => 'mtr', 'Medtr8g072640' => 'mtr', 'MELO3C013480.2' => 'cme', 'MELO3C015691.2' => 'cme', 'MELO3C026512.2' => 'cme', 'Migut.C00353' => 'egut', 'Migut.N01365' => 'egut', 'Migut.N02990' => 'egut', 'Migut.O00018' => 'egut', 'MSTRG.1006' => 'ama', 'MSTRG.16962' => 'ama', 'MSTRG.22080' => 'ama', 'MSTRG.24519' => 'ama', 'MSTRG.24907' => 'ama', 'Nitab4.5_0000235g0130' => 'nta', 'Nitab4.5_0000601g0140' => 'nta', 'Nitab4.5_0000855g0140' => 'nta', 'Nitab4.5_0004269g0050' => 'nta', 'Nitab4.5_0004448g0010' => 'nta', 'Nitab4.5_0004529g0010' => 'nta', 'Nitab4.5_0007096g0050' => 'nta', 'Nitab4.5_0008661g0030' => 'nta', 'Nitab4.5_0008975g0010' => 'nta', 'Nitab4.5_0008975g0030' => 'nta', 'Nn5g29236' => 'nnu', 'Nn5g31056' => 'nnu', 'Nn6g31614' => 'nnu', 'Oeu006115.1' => 'oeu', 'Oeu013576.1' => 'oeu', 'Oeu035759.1' => 'oeu', 'Oeu035865.1' => 'oeu', 'Oeu042504.1' => 'oeu', 'Oeu043405.1' => 'oeu', 'Oeu045751.1' => 'oeu', 'Oeu050938.1' => 'oeu', 'Os02g0713900' => 'osa', 'Os08g0512700' => 'osa', 'Os09g0492700' => 'osa', 'Peaxi162Scf00385g00039' => 'pax', 'Peaxi162Scf00431g00310' => 'pax', 'Peaxi162Scf00861g00321' => 'pax', 'Peaxi162Scf01393g00015' => 'pax', 'PGR042G0416' => 'pgr', 'PGR083G1754' => 'pgr', 'PGR102G3229' => 'pgr', 'PGR142G0357' => 'pgr', 'PGSC0003DMG400003461' => 'stu', 'PGSC0003DMG400009924' => 'stu', 'PGSC0003DMG400013663' => 'stu', 'PGSC0003DMG400018679' => 'stu', 'PGSC0003DMG400034947' => 'stu', 'PGSC0003DMG400035185' => 'stu', 'PGSC0003DMG400036680' => 'stu', 'PGSC0003DMG400040089' => 'stu', 'PGSC0003DMG400042285' => 'stu', 'PGSC0003DMG400043537' => 'stu', 'PGSC0003DMG400045253' => 'stu', 'PGSC0003DMG400046343' => 'stu', 'PGSC0003DMG400047267' => 'stu', 'Phvul.002G118900' => 'pvu', 'Phvul.003G271800' => 'pvu', 'Phvul.008G208900' => 'pvu', 'Phvul.L004337' => 'pvu', 'Potri.001G457000' => 'ptr', 'Potri.002G004000' => 'ptr', 'Potri.004G208500' => 'ptr', 'Potri.005G257000' => 'ptr', 'Potri.009G169900' => 'ptr', 'Potri.011G145000' => 'ptr', 'Pp3c11_8620' => 'ppa', 'Pp3c1_10000' => 'ppa', 'Pp3c2_37900' => 'ppa', 'Prupe.7G187000' => 'ppe', 'Prupe.7G187500' => 'ppe', 'Prupe.8G182300' => 'ppe', 'Psat0s3155g0040' => 'psa', 'Psat0s3229g0120' => 'psa', 'Psat0s3314g0080' => 'psa', 'Psat2g146800' => 'psa', 'PSO017G2662' => 'pso', 'PSO017G7132' => 'pso', 'PSO063G1659' => 'pso', 'PSO170G5113' => 'pso', 'PSO384G2160' => 'pso', 'PSO398G0007' => 'pso', 'PSO541G4492' => 'pso', 'PSO675G8965' => 'pso', 'PSO724G0775' => 'pso', 'PSO782G1632' => 'pso', 'PSO782G5488' => 'pso', 'QL02p015846' => 'qlo', 'QL11p056860' => 'qlo', 'RcHm_v2.0_Chr2g0096771' => 'rch', 'RcHm_v2.0_Chr4g0393421' => 'rch', 'RcHm_v2.0_Chr6g0281271' => 'rch', 'RcHm_v2.0_Chr6g0281291' => 'rch', 'RcHm_v2.0_Chr6g0281321' => 'rch', 'RcHm_v2.0_Chr6g0281411' => 'rch', 'RcHm_v2.0_Chr6g0281421' => 'rch', 'RcHm_v2.0_Chr6g0281471' => 'rch', 'RcHm_v2.0_Chr6g0281491' => 'rch', 'RcHm_v2.0_Chr6g0281521' => 'rch', 'RcHm_v2.0_Chr7g0216871' => 'rch', 'Rhsim06G0002700' => 'rsi', 'Rhsim10G0191200' => 'rsi', 'Rhsim11G0198700' => 'rsi', 'Sabra02G0002800' => 'sbr', 'Sabra04G0140500' => 'sbr', 'Sabra05G0198900' => 'sbr', 'Sabra09G0131700' => 'sbr', 'Sabra11G0130000' => 'sbr', 'Sabra16G0309500' => 'sbr', 'SalBow1G2325' => 'sbo', 'SalBow4G0720' => 'sbo', 'SalBow4G1519' => 'sbo', 'SalBow5G1375' => 'sbo', 'SalBow5G1863' => 'sbo', 'SalBow5G4144' => 'sbo', 'SalBow5G4560' => 'sbo', 'SalBow6G2538' => 'sbo', 'SalBow7G0019' => 'sbo', 'Sc02g0009310' => 'sci', 'Sc18g0005730' => 'sci', 'Sed0004823' => 'sed', 'Sed0007386' => 'sed', 'Sed0016236' => 'sed', 'Sed0017118' => 'sed', 'Sed0022582' => 'sed', 'SEGI_01224' => 'sgi', 'SEGI_15982' => 'sgi', 'SEGI_17176' => 'sgi', 'SEGI_19696' => 'sgi', 'SEGI_24037' => 'sgi', 'SEGI_29977' => 'sgi', 'SEGI_33055' => 'sgi', 'SEGI_39822' => 'sgi', 'SGA_v2.0_scaffold108G30986' => 'sas', 'SGA_v2.0_scaffold161G37870' => 'sas', 'SGA_v2.0_scaffold220G42633' => 'sas', 'SGA_v2.0_scaffold26G11229' => 'sas', 'SGA_v2.0_scaffold80G25810' => 'sas', 'SGA_v2.0_scaffold98G29310' => 'sas', 'SHI07951' => 'shi', 'SMO203G0229' => 'smo', 'Solyc02g038740.4' => 'sly', 'Solyc02g082260.3' => 'sly', 'Solyc03g032020.4' => 'sly', 'Sopen02g012160' => 'spe', 'Sopen02g026920' => 'spe', 'Sopen03g005860' => 'spe', 'Sopen03g005870' => 'spe', 'Sopen03g024160' => 'spe', 'Sp5g31650' => 'spa', 'TAR374G1527' => 'tar', 'TAR376G0704' => 'tar', 'TAR381G0264' => 'tar', 'TAR625G1359' => 'tar', 'TAR628G0537' => 'tar', 'THA.LOC104807413' => 'tha', 'THA.LOC104809909' => 'tha', 'THA.LOC104812013' => 'tha', 'THA.LOC104819699' => 'tha', 'Thecc.01G002000' => 'tca', 'Thecc.02G148300' => 'tca', 'Thecc.08G099100' => 'tca', 'Thhalv10018320m.g' => 'esa', 'Thhalv10022614m.g' => 'esa', 'TPR.G11710' => 'tpr', 'TPR.G11761' => 'tpr', 'TPR.G14819' => 'tpr', 'TPR.G21810' => 'tpr', 'TPR.G24462' => 'tpr', 'TPR.G2689' => 'tpr', 'TPR.G27927' => 'tpr', 'TPR.G33783' => 'tpr', 'TPR.G33793' => 'tpr', 'TPR.G33799' => 'tpr', 'TPR.G38479' => 'tpr', 'TPR.G5205' => 'tpr', 'TWI12G0952' => 'twi', 'TWI56G0932' => 'twi', 'TWI79G1264' => 'twi', 'unitig_578.g16096' => 'ugi', 'vmacro02346' => 'vma', 'vmacro18478' => 'vma', 'vmacro20604' => 'vma', 'vmacro21762' => 'vma', 'VMungo0251G3006' => 'vmu', 'VMungo0540G0363' => 'vmu', 'VMungo0647G1192' => 'vmu', 'VMungo1215G2787' => 'vmu', 'Zm00001eb028260' => 'zma', 'Zm00001eb029950' => 'zma', 'Zm00001eb102030' => 'zma', 'Zm00001eb183790' => 'zma', 'Zm00001eb188880' => 'zma', 'Zm00001eb199950' => 'zma', 'Zm00001eb252590' => 'zma', 'Zm00001eb316960' => 'zma' ) $gf_id = 'HOM05D000935' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000935' ) $data_identifier = 'HOM05D000935' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 95, 'aar' => (int) 2, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 2, 'arhy' => (int) 6, 'ath' => (int) 2, 'atr' => (int) 1, 'acertr' => (int) 4, 'cqu' => (int) 4, 'bca' => (int) 17, 'bol' => (int) 64, 'bra' => (int) 8, 'can' => (int) 12, 'cansat' => (int) 2, 'chi' => (int) 2, 'cru' => (int) 3, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 2, 'cpa' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 5, 'dca' => (int) 3, 'din' => (int) 9, 'dzi' => (int) 3, 'eca' => (int) 5, 'bvu' => (int) 1, 'egr' => (int) 8, 'fan' => (int) 26, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 5, 'lja' => (int) 3, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mdo' => (int) 11, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 3, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 13, 'pvu' => (int) 4, 'ptr' => (int) 6, 'ppa' => (int) 3, 'ppe' => (int) 3, 'psa' => (int) 4, 'pso' => (int) 11, 'qlo' => (int) 2, 'rch' => (int) 11, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 9, 'sci' => (int) 2, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 3, 'spe' => (int) 5, 'spa' => (int) 1, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 3, 'esa' => (int) 2, 'tpr' => (int) 12, 'twi' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 4, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb316960' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1